PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894358.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 364aa    MW: 41483.8 Da    PI: 6.6725
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.6e-23953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRr+gilKKA EL +LCd+++a+++fs+tg+
  XP_023894358.1  9 KRLESTSNRQVTYSKRRHGILKKARELAILCDIDIALLMFSPTGR 53
                    689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MGRVKLKIKR LESTSNRQVT YSKRRHGILK KARELAILCD IDIALLMFSP TGRSTLYQGE  60
NRNFEEVIAK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIEDFLGSS SQTVEELGNR  120
LRLLQVQLTE LQKRLSYWSD PEKIDNVENL RQMEDLLRES IQQIRLQKEN FGKHQLASLE  180
CATQFQNGMP LPMLMNSVHD AQSLSWLSNN DNQHMLFPHE PNFLPQRDVE CSSDVSLPGY  240
SGYFSTEKKD AVGNTIQLAH MGSGGGTLDE LSRNTCLSMQ LGEQYAYPSY GSSNLLEDTK  300
LKPQMEMNLQ VNPLDYQINS NFGVSRPLCD SGHHSWFSAS APCSISIYNQ NGYQCNQIDS  360
QEPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-97M-type_MADS family protein