PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894428.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 452aa MW: 49878.3 Da PI: 8.1055

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	81	105	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+C+F H+ XP_023894428.1 81 GEKDCAHYMLTRTCKFGDSCRFDHP 105 7889********************8 PP
2	zf-CCCH	35.1	2.2e-11	133	159	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ XP_023894428.1 133 PGMPDCPYFLKTQRCKFGLRCKFNHPK 159 5789*********************96 PP
3	zf-CCCH	38.7	1.6e-12	182	206	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_023894428.1 182 EPPCAFYMKTGKCKFGPTCKFNHPK 206 79*********************96 PP
4	zf-CCCH	38.2	2.4e-12	259	284	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_023894428.1 259 PGEADCPFYLKTGSCKYGATCRYNHP 284 57899********************9 PP
5	zf-CCCH	40.6	4.1e-13	343	366	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++CkF+H+ XP_023894428.1 343 QIECDFYMKTGECKFGENCKFHHP 366 568********************8 PP
6	zf-CCCH	43.2	6.7e-14	397	420	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++++tGtCkyG++CkF H+p XP_023894428.1 397 VLCPYYLKTGTCKYGATCKFDHPP 420 79********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MYVLITKLAF KPYLLYSNIY VSCGFLVYTC LLRTIVLYHQ TVLGAHNTIG QTEAWYSTNS 60 LAKRPRFDSA SNLPIYPQRP GEKDCAHYML TRTCKFGDSC RFDHPIWVPE GGIPDWKEVP 120 PLAATTESLP ERPGMPDCPY FLKTQRCKFG LRCKFNHPKD KLVTEVALEN AAISALPERP 180 SEPPCAFYMK TGKCKFGPTC KFNHPKDIQI PLLGQENGND EQTELTMKAL ATADAILANS 240 LASYTPALIY NSKGLPVRPG EADCPFYLKT GSCKYGATCR YNHPDRHAIN PPAAAIGLPI 300 VASPATNLNI GVVNPAASIY QTIDPRLAQP TVGPTIYPQR PGQIECDFYM KTGECKFGEN 360 CKFHHPIDRS APSLLKQAQQ QAVKLTLAGL PRREGAVLCP YYLKTGTCKY GATCKFDHPP 420 PGEVMAMATS QGTSTAVEGD EKEAELVQEQ QQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MYVLITKLAF KPYLLYSNIY VSCGFLVYTC LLRTIVLYHQ TVLGAHNTIG QTEAWYSTNS  60
LAKRPRFDSA SNLPIYPQRP GEKDCAHYML TRTCKFGDSC RFDHPIWVPE GGIPDWKEVP  120
PLAATTESLP ERPGMPDCPY FLKTQRCKFG LRCKFNHPKD KLVTEVALEN AAISALPERP  180
SEPPCAFYMK TGKCKFGPTC KFNHPKDIQI PLLGQENGND EQTELTMKAL ATADAILANS  240
LASYTPALIY NSKGLPVRPG EADCPFYLKT GSCKYGATCR YNHPDRHAIN PPAAAIGLPI  300
VASPATNLNI GVVNPAASIY QTIDPRLAQP TVGPTIYPQR PGQIECDFYM KTGECKFGEN  360
CKFHHPIDRS APSLLKQAQQ QAVKLTLAGL PRREGAVLCP YYLKTGTCKY GATCKFDHPP  420
PGEVMAMATS QGTSTAVEGD EKEAELVQEQ QQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein