PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894467.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YC

Protein Properties

Length: 244aa MW: 26523.7 Da PI: 5.538

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.8e-56	49	153	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_023894467.1 49 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 143 89***998899****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_023894467.1 144 VDIVPRDEIK 153 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MENNNNGNSN NQIAQSSSYP LQPTPPPPPP PPPSSATPFH HLLQQQQQQL QMFWSYQRQE 60 IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAAGLV GGIVGATTAS GVPYYYPPMG 180 QPAGGPHGGM MIGRPAAMDP TAGGVYVQPP SNAWQSVWQG HAAADDGSYG SGASSGHGNL 240 DGQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-107	NF-YC family protein