PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894513.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23461.8 Da PI: 10.9459

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk y ++s XP_023894513.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALVIFSPSGKGYQFAS 59 79*********************************************9986 PP
2	K-box	70.2	6.3e-24	79	171	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ +e +++e++ Lk+ ++ L+ + h GedL+sL +keL+qLe+q ++++++R+kK +++ e+i+ +++k+++lqeen L+++l XP_023894513.1 79 IDQHSRPMEFWRTEIEELKRSVDILEARLSHSAGEDLSSLGMKELRQLERQTRTAVERVRAKKRRIISENINLMKRKQRALQEENSHLQRRLH 171 457788899********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALVIFSP SGKGYQFASH 60 DMNRTIARYR SEVGLPQSID QHSRPMEFWR TEIEELKRSV DILEARLSHS AGEDLSSLGM 120 KELRQLERQT RTAVERVRAK KRRIISENIN LMKRKQRALQ EENSHLQRRL HELHDTNVSS 180 KISGQTASSC NISNPRVLQD GVVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-46	MIKC_MADS family protein