PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894843.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 351aa    MW: 39844.9 Da    PI: 8.012
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.8e-21953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs++gk
  XP_023894843.1  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPSGK 53
                    689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP SGKPSICRGM  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS TQTIEDLTNQ  120
ARSLETQLAE INKRLSYWTT PDKINSVEHL GQMEDSLRES LNQIRTHKEN LQKQQFMSLE  180
CSSQFQNGMH IPFRIGAEQQ LQPLSWLPNN DSRQIMFPED PNLLSHRDVE CSASSSLGSY  240
SGYFGTGKNS EIPNSGQEHG LLNQLTRNAP LRLQLGGQYP YLPYNVNLLN DTKFQPAAQM  300
NQQEDPLEYH VSGNFGTSRP GYETTQHGWA STSGSSVVNM FDEHLYPQQP N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-95M-type_MADS family protein