PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894867.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 631aa    MW: 71911.8 Da    PI: 6.8842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.33.2e-1142586291374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cAea+ ++dl+ a+++L +++ +asp gd  qRla++f++AL+arl +++sely al++++ s   s++ l+a++lf+ ++P++++s+
  XP_023894867.1 258 LRTLLVHCAEAMGNNDLKGANEVLLQIRLHASPFGDGSQRLAHCFANALQARLDGTGSELYGALSAKTMS---SIHMLKAYRLFVSACPFVRISN 349
                     6789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + + q+I++ +e+++r+Hii f+i +G+QWpaL+q L++Rp+gpp lRiTg++ p++g   + ++eetg+rLa+++++++vpfe+n+ +a+r+e+
  XP_023894867.1 350 FFTTQMIMDLAEKSTRLHIIHFGILYGFQWPALIQRLSERPGGPPVLRITGIDFPQPGfrPASMIEETGQRLANYCQRFNVPFEYNA-IAQRWET 443
                     *********************************************************9*9***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+++++E+++Vn+ ++  +llde+v l+s+rd+vL+l+k ++P+v+ +   +  +n++ F  rf eal+++sa+fd+++++++re++eri
  XP_023894867.1 444 IQVDDLKINKDEVTIVNCLYRFRYLLDETVVLSSPRDTVLNLIKMINPDVFFHGIVNGAYNAPFFTSRFREALYFFSAVFDMFDENASREDKERI 538
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+e+ g e+ nv+aceg +r++r e +++W+ r ++aG++++pl++++++++k  ++ ++ + + v+e+s++lv+gWk+r L+++S+W+
  XP_023894867.1 539 VFEQEIYGTEVLNVIACEGPKRVQRPEMYKQWQVRNMRAGLRQLPLNQEIVNKVKDKVKLCYHKDFLVDEDSQWLVQGWKGRILFALSCWK 629
                     **************************************************************889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    
MASNEWCYSS EESDSSDAVL NYIGQILMKE GLENGTCVFS DATLQAAEKS FYDVLGEKYP  60
SSINQTPSFC NCYGCKNNVT ANNAGESSSV CDLCQHKSCY VLAPPVECTY QSNSSSSMQS  120
FSHPSNFFST VGYSQSFLPF KDATKETWGL LPQGNHMNLL VEKGKKDQSA SRLMELKKHH  180
QQHQIECEPR RTNKHLAVYN EVPDEPSEMF DKVLLFNNEA DEPAVYNPEA SQIGRGKDTN  240
CEPTRRRKRV NKKDFVDLRT LLVHCAEAMG NNDLKGANEV LLQIRLHASP FGDGSQRLAH  300
CFANALQARL DGTGSELYGA LSAKTMSSIH MLKAYRLFVS ACPFVRISNF FTTQMIMDLA  360
EKSTRLHIIH FGILYGFQWP ALIQRLSERP GGPPVLRITG IDFPQPGFRP ASMIEETGQR  420
LANYCQRFNV PFEYNAIAQR WETIQVDDLK INKDEVTIVN CLYRFRYLLD ETVVLSSPRD  480
TVLNLIKMIN PDVFFHGIVN GAYNAPFFTS RFREALYFFS AVFDMFDENA SREDKERIVF  540
EQEIYGTEVL NVIACEGPKR VQRPEMYKQW QVRNMRAGLR QLPLNQEIVN KVKDKVKLCY  600
HKDFLVDEDS QWLVQGWKGR ILFALSCWKV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein