PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895144.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 269aa MW: 30995.4 Da PI: 4.6732

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.3e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl XP_023895144.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E+ ++++++ +lG++ W++Ia+ ++ gRt++++k++w++ XP_023895144.1 67 RGGFTETEENQIIQLHSRLGNR-WSKIAAQFP-GRTDNEIKNHWNT 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TETEENQIIQ LHSRLGNRWS KIAAQFPGRT DNEIKNHWNT RIKKRLKLLG 120 LDPVTHKPLE QNENSGDDKD EITLESNSSK GQEERQPEVM SIDEDNDAKQ DFVPTEETRT 180 EVELTLDETN DLLNNYDTWC GSLDLGSWMN QETNTNTSYS STSFSLENSS NPSMGESPSL 240 QWVESVDSIL SWDGFNHLEQ DLFFLENSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	3e-83	MYB family protein