PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023895408.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 433aa    MW: 49063 Da    PI: 8.2337
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023895408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.27e-21952144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k i+n+  r vt+skR++g+ KKA+ELS+LC+++v+vii+++ +
  XP_023895408.1  9 KLISNEKSRMVTYSKRKKGLKKKAYELSTLCGVDVCVIIYGPIQ 52
                    569**************************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MGRAKINMKL ISNEKSRMVT YSKRKKGLKK KAYELSTLCG VDVCVIIYGP IQKDNSNELA  60
IWPENQEKVE KIINKYKGMS TGTRKKETLS LSDYFIQRKK NIEKEISRVR MESFEAMYST  120
WIEGLNSFSD AQKEVLLGLL DSKIDEVQRK INVINGRNYL INDAALGTAS SSKFGSIRSD  180
FSYTQGMIQR SVAPKIINQQ PISYVKVMPL ENQLPMTLGE RFNNFSDAQR AVLRGILDNK  240
IDEVQRNIDV LNGGSYMIND AASGLTGSSN FASIPTDFPY TQGMLQRNLE TSPINQQPIS  300
YVKPLDYQFP SCYSSDQSLF PLLPFDHLNP MANPMEVKGV DYSQFGGMSS SGIQYTPSND  360
QICYDPTVGM VDNLMVNNSR VPAMHYHNPA MQQMVAYGQQ PMMQTFSSQI EGPPVDEFYN  420
INEFEMKNKM ERF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.19e-24M-type_MADS family protein