PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895412.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 494aa MW: 54890.8 Da PI: 4.8487

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l ++++ G g+W+t ++ g+ R++k+c++rw +yl XP_023895412.1 14 KGRWTVEEDEILTNYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.4	6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia ++ gRt++++k++w+++l XP_023895412.1 67 RGSITPEEEETIVKLHTVLGNR-WSLIAGNLP-GRTDNEIKNYWNSHL 112 7889****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MGRAPCCEKV GLKKGRWTVE EDEILTNYIQ ANGEGSWRTL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGSI TPEEEETIVK LHTVLGNRWS LIAGNLPGRT DNEIKNYWNS HLSRKLYSFT 120 KSTNESLSTV INMAATRKRR DGRGRIRRLA TKKHKNTASN IVGMSLLQSG TTATDDEVLD 180 PTAQEKARVP GFTFVGQAGK NPMMGLVGSG APEQQGEVKR GPGVHGSCMD TTVIILGQAG 240 PNKEIQNSEV VLCPSQKREN EGLGPYELFD GEIMHPGYVL ESGVVNTDGS VAHKQQRENG 300 VLGINSEEER VNNRAVKTEK ETTSEEKESS VMSSNVVDGE WNTCSSSINS SFDYDWLDWD 360 WVGGAECHNQ YELWDEGENM LACLWGTGKD GSVAHKQQRE NGVLGINSEE ERVNNRAVKT 420 EKETTSEEKE SSVMSSNVVD GEWNTCSSSI NSSFDYDWLD WDWVGGAECH NQYELWDEGE 480 NMLACLWGTG KGED

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MGRAPCCEKV GLKKGRWTVE EDEILTNYIQ ANGEGSWRTL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGSI TPEEEETIVK LHTVLGNRWS LIAGNLPGRT DNEIKNYWNS HLSRKLYSFT  120
KSTNESLSTV INMAATRKRR DGRGRIRRLA TKKHKNTASN IVGMSLLQSG TTATDDEVLD  180
PTAQEKARVP GFTFVGQAGK NPMMGLVGSG APEQQGEVKR GPGVHGSCMD TTVIILGQAG  240
PNKEIQNSEV VLCPSQKREN EGLGPYELFD GEIMHPGYVL ESGVVNTDGS VAHKQQRENG  300
VLGINSEEER VNNRAVKTEK ETTSEEKESS VMSSNVVDGE WNTCSSSINS SFDYDWLDWD  360
WVGGAECHNQ YELWDEGENM LACLWGTGKD GSVAHKQQRE NGVLGINSEE ERVNNRAVKT  420
EKETTSEEKE SSVMSSNVVD GEWNTCSSSI NSSFDYDWLD WDWVGGAECH NQYELWDEGE  480
NMLACLWGTG KGED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	6e-73	MYB family protein