PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023895908.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 256aa    MW: 29175.3 Da    PI: 6.6757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023895908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.11.9e-22959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien s  qvt++kRr gi+KKA+EL vLCd++v +++fs+tg+l  ++s
  XP_023895908.1  9 KKIENPSSLQVTYCKRRDGIIKKASELAVLCDTDVGLVMFSPTGRLNSFAS 59
                    68*********************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVRKKVIVKK IENPSSLQVT YCKRRDGIIK KASELAVLCD TDVGLVMFSP TGRLNSFASN  60
GRIEDIFLRY IDRPNELRGG PIENEECLYR SLKNSKYEGE ILEKIAKLKT LGKELHDLNQ  120
LEDEMQQKMR YYNPDVEKIT SIYDALVHQK FLTNAIQRIE EMKQAKLLGK QIVPLEPDSI  180
EVGKEKESQS SEVPVLDIKD SNFMAEESVD SNGRRNPVME DHHQQKTCSL GGPHLSIDYL  240
KTQSNWNLQC GSTSQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-32MIKC_MADS family protein