PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896074.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YC

Protein Properties

Length: 296aa MW: 32804.7 Da PI: 6.6808

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	148	2e-46	75	177	2	100
NF-YC 2 lksfwekq....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l+++w++q +++d+k h+lPlarikk++kad++vkmisaeaP+l++k c++fi elt+r+w+haeenkrrtl++sdia+a++++d+fdfl XP_023896074.1 75 LNTYWQNQvsklETEDHDYKLHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFL 169 789***6663345689************************************************************************* PP NF-YC 93 vdivprde 100 +divpr++ XP_023896074.1 170 IDIVPRED 177 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MQTPYGAVPP AQAAPVAPKR YDGKNGSPLY DTAHGGHYGA SSAIATSGHQ PPQETFTGHW 60 QNVSQGLNGS YRDILNTYWQ NQVSKLETED HDYKLHQLPL ARIKKVMKAD PEVKMISAEA 120 PILFAKGCDI FITELTMRAW IHAEENKRRT LQRSDIASAL AKSDMFDFLI DIVPREDATP 180 QHKRRPEYTP VGTYAVPDSS NPGPGSSGMV PGQDQQQQMG GQAEFGMEQP HLAQQPQYQQ 240 QTGMYPPPAA QQQFSGNQMF DPNMYAQPPQ AYAMGQMQQM PQAVRSPDVA PRTNHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	RRTLQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	2e-45	NF-YC family protein