PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023896380.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 300aa    MW: 34608.6 Da    PI: 6.5855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023896380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++  G g+W++ a++ g++Rt+k+c++rw++yl
   XP_023896380.1 20 RGPWTLEEDTLLIHYIAHNGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding482.9e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_023896380.1  73 RGNLSPQEQLLILELHCKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MSTCSKSISS SSEDDSELRR GPWTLEEDTL LIHYIAHNGE GRWNLLAKRS GLRRTGKSCR  60
LRWLNYLKPD VKRGNLSPQE QLLILELHCK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARHLKIDTN SVAFQDIIRN YWMPRLLQRI EESSSSGVLF QNSAIPQPLD SAYQHSVTTA  180
PAQVVMQGPL RLSETIQSLG HHEQNPESES MNVLQIPQLS ECPTSHFHAK VNNDDGTFVK  240
DYYYADNNSY DMEAFNLESI SPLENFEDSS SKSHVVENNW ADNDFSGSMW NMDGLWQIRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-83MYB family protein