PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023896643.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GATA
Protein Properties Length: 254aa    MW: 29382.2 Da    PI: 8.9281
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023896643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-19187221135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C + +Tp+WR+gp g+ktLCnaCG++y++ +l
  XP_023896643.1 187 CSHCEAEETPQWREGPLGPKTLCNACGVRYKSGRL 221
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVIYDMNHDY EAWFELEALN NTIISGIIDD DSGSTLATPQ DDLCDINFTM LPGYFIHSDW  60
NDFINNSDLE HNNSNLEQKL KVGETKIAKV GETINREETK NRVAKETKKR DAFKDMNGVL  120
VKCIESFSQK PRTPTTKRLN TKNIYTPKEE LTTKRLNTKK IYTKKEQSFS KLKRKNREEE  180
EGYVRKCSHC EAEETPQWRE GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFDVSKYSN  240
FHKKILRNKG LDQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-35GATA family protein