PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896799.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 157aa MW: 17644.9 Da PI: 6.4917

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.7e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dC+++pyfp ++p++f +vh+++Gasnv k+l++lp + r++a+++l++eA+ r++dPvyG+vg+i++l+qq++++++++a XP_023896799.1 5 RCAACKYLRRRCPSDCIFSPYFPPNDPQRFSCVHRIYGASNVGKMLQQLPSHLRSQAADTLYFEAQYRLQDPVYGCVGIISQLHQQINSAESQVA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_023896799.1 100 KIQAE 104 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MISGRCAACK YLRRRCPSDC IFSPYFPPND PQRFSCVHRI YGASNVGKML QQLPSHLRSQ 60 AADTLYFEAQ YRLQDPVYGC VGIISQLHQQ INSAESQVAK IQAEIAFLNS NAKEVEEPQV 120 DQHTEANSNF INNLLPEQIN TLDLSPYGLP STQNILV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-53	LBD family protein