PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023896837.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25062.5 Da    PI: 6.5347
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023896837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.1e-212263849
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +rqvtfskRr+g++KKA ELSvL +ae+avi++s+++k+y +
  XP_023896837.1 22 QRQVTFSKRRAGLFKKAGELSVLSGAEIAVIVISKKDKVYCF 63
                    7**************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVMPKKTQGR QKVEMKELDG NQRQVTFSKR RAGLFKKAGE LSVLSGAEIA VIVISKKDKV  60
YCFGHPNVET ILNRYLTGGD DATLAESSQE HVAVNEFNMQ YDEAQRELAM EKNRLKEIEE  120
DVKMKKMSGS GGFWWDNPLD ENMGLEEMQH YLWSLQEARK KVAAKLDERM SMRMGKSSLL  180
SSMDMKVDVG NNNFVYPNLN GGNNNGGVFD SHVYGFELGQ Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-33M-type_MADS family protein