PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023897867.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 276aa    MW: 32269.6 Da    PI: 4.9414
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023897867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.84.3e-2117103286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+ +Li+a++e++ +l+rg+lk+  Weev+  +       ++++ ++s+ qC++k+e+l++ry+ + +++ ++     s++pyf  ++
  XP_023897867.1  17 WTHEETVHLIQAYQEKWYSLKRGQLKASNWEEVAVTVsarcgydHSEPSSKSALQCRHKIEKLRQRYRSESQQRHRH-----SSWPYFPLMD 103
                     ***********************************999999***9****************************9997.....57****9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MGSPNPSPST TSKPLPWTHE ETVHLIQAYQ EKWYSLKRGQ LKASNWEEVA VTVSARCGYD  60
HSEPSSKSAL QCRHKIEKLR QRYRSESQQR HRHSSWPYFP LMDSLHRGPL PISARPPDNN  120
NNSNSNIIND EDEDEDDNDN ESDEENIYSI RSRSINYLLR KPTIVNRFAG IADAGKPIRK  180
RHRDFADEVV VEEENGDDDE EEEEEEEEKG RDAVVSELAA EIRKFAERFI GMENMKMEMM  240
KDTERYRMEM ENKRMELILD SQKRILDSIH RTFASP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-38Trihelix family protein