PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898508.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 294aa    MW: 32563.5 Da    PI: 6.1566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+++ +q+G+g +W + +++ g++R++k+c++rw++yl
   XP_023898508.1 14 KGPWSPEEDATLKRYLEQHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding43.57.5e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+eEd ++  +  +lG++ W+ Ia+ ++ gRt++++k++w++
   XP_023898508.1  68 RGGFTEEEDSIICTLYGRLGSR-WSVIASQLP-GRTDNDIKNYWNT 111
                      788*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPE EDATLKRYLE QHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKRGG FTEEEDSIIC TLYGRLGSRW SVIASQLPGR TDNDIKNYWN TKLKKKLLAA  120
GNACPKSATT NRSPHETSNI FSHLNMAQIS ASIPKAETYD YGSSSCFYTN SNTLMRTPLV  180
EANNMENCDP DCIILDPSQF HVSRPMQVPD FRTSGSESYS TITTSSQDVA GLSPSSTLAL  240
ENNYSLLSCN GGVNDDGLLM DFQFECHDDD LLDGFAFQED TLEKLPHSCL VNSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-69MYB family protein