PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898633.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 812aa    MW: 90073.9 Da    PI: 5.4293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-1986141156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r++L+++lgL+ rqVk+W qNrR+++k
  XP_023898633.1  86 KKRYHRHTARQIQEMEALFKECPHPDDKQRQKLSQELGLKPRQVKFWLQNRRTQMK 141
                     688899***********************************************998 PP
2START164.48e-522865112206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     la +  +elvk+ + +ep+W +    eng +vl  +e ++              +++ea+r+s+vv+m++ +lv  +ld + +W e ++    +a
  XP_023898633.1 286 LAASSINELVKMCQGNEPLWIRNN--ENGRDVLNLEEHARMfpwpmnlkqnsseFRTEASRDSAVVIMNSINLVDAFLDAN-KWVELFPsivsRA 377
                     678899****************99..********99998889***************************************.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     +t++vis+g      g  qlm+aelq+lsplvp R++ f+Ry++q  ++g+w+ivd  +ds  ++  ++s+ R ++ pSg+li++++ng+s+vtw
  XP_023898633.1 378 KTVQVISPGdsgqasGSFQLMYAELQVLSPLVPtREVHFLRYCQQnAEEGTWAIVDFPIDSFHDNL-QPSFPRYKRWPSGCLIQDMPNGYSRVTW 471
                     ****************************************************************98.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh++++++ +h+++   v +g+a+ga++w+a lqrqce+
  XP_023898633.1 472 VEHAEVEEKPVHQIFSDYVCNGMAFGAQRWLAVLQRQCER 511
                     **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    
MYGDCQVMST MGGNVVSSET LFSSPPIQNS NYNFMSSMPF QPFPSMIAKE ENGFLRGKDE  60
MESGSGSEQA EEKSANEQES EQPPKKKRYH RHTARQIQEM EALFKECPHP DDKQRQKLSQ  120
ELGLKPRQVK FWLQNRRTQM KAQQDRTDNA ILKAENENLR NENYRLQTAL RNVVCPNCGG  180
PCVIGGGMGL DEQKIHLENA RLRDELERVC CIASRYAGRP IEVMSPAPHL MPPSLDLDMN  240
MYSRHFPDPM ASCTEMIPVP MLPPETSHFP EGGLLLEEEK SIALELAASS INELVKMCQG  300
NEPLWIRNNE NGRDVLNLEE HARMFPWPMN LKQNSSEFRT EASRDSAVVI MNSINLVDAF  360
LDANKWVELF PSIVSRAKTV QVISPGDSGQ ASGSFQLMYA ELQVLSPLVP TREVHFLRYC  420
QQNAEEGTWA IVDFPIDSFH DNLQPSFPRY KRWPSGCLIQ DMPNGYSRVT WVEHAEVEEK  480
PVHQIFSDYV CNGMAFGAQR WLAVLQRQCE RVASLMARNI SDLGVLPSPE ARRNLMKLAQ  540
RMIRTFCVNI SSSSGLMWTA LSDSPDDTVR INTRKISELG QPNGLILCAV STTWLPYPHG  600
HVFDLLRDER RRSQLEVLSN GNSLHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ  660
ESCTDQSGSL VVYTTVDVDS IQLAMNSEDP SCIPLLPIGF VIIPVRSTTD TTNTTSGDGN  720
PMPSSEEGNA STTSSPAGCL LTVVLQVVAS TIPSAKLNLS TVTAVNNHLC NTVHQINAAL  780
SSSSSTTTTS CPDNVSVVGS CTETTIATSP KQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein