PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023898840.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 705aa MW: 75647.6 Da PI: 9.4281

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023898840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.9	3.8e-30	92	176	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ +r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea XP_023898840.1 92 RWPRQETLALLRIRSEMDAVFRDATLKGPLWEDVSRKLTELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 176 8*******************************************************************866665..****985 PP
2	trihelix	108.4	4.6e-34	513	598	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s++m++ g++r+pk+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf++l+a XP_023898840.1 513 RWPKVEVLALIKLRSGLEQRYQEAGPKGPLWEEISARMHRMGYKRNPKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHELDA 598 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MQQEGGGSNK AQFEMSAAGA NPNPMGMESS EQGGGGQLVV EAASPISSRP PASVSASAAV 60 NLDELMPLQG DEVGDEADRA GGAAVGVGGG NRWPRQETLA LLRIRSEMDA VFRDATLKGP 120 LWEDVSRKLT ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FSELEALHSS 180 SPGSSSAATT SNNPSPFLIS PPPATTTTNP AVVSSTAGIG IISNPMPISS VRVTQASPPT 240 IGIFPANPSA STAAMTAPVV SVQPAAAAVV RTATQLPTGI SFSSNSSSSS LGTNDDDDDD 300 EESLELEGEP SNVGSSRKRK RGSSSSSGTR RMMQFFENLM KQVMHKQEVM QQRFLEAIEK 360 SEQDRMIRDE AWKRQEMARL AREHEVMAQD RAISASRDAA IVTFLQKITG QTIQLPTPAP 420 PLSFPAAPPP PPVSQQAPIP TSTPAPAPAP TPTPTPTPPP SQPQQQQQQQ VHQHSQNFSR 480 VVLAVPEQQV PPQAQDIIMS GGGGSFEATS SSRWPKVEVL ALIKLRSGLE QRYQEAGPKG 540 PLWEEISARM HRMGYKRNPK RCKEKWENIN KYYKKVKESN KKRPEDAKTC PYFHELDALY 600 RKKILGGGST SGGGGTSTTS VNQNMPQQQQ ETIKQDTSDA PAAAIMPTPQ TQQQPLAATT 660 ASENKNGASS HVQAQTQTQT QSSNVGLPED LFGEGIGGAS KKKTL

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MQQEGGGSNK AQFEMSAAGA NPNPMGMESS EQGGGGQLVV EAASPISSRP PASVSASAAV  60
NLDELMPLQG DEVGDEADRA GGAAVGVGGG NRWPRQETLA LLRIRSEMDA VFRDATLKGP  120
LWEDVSRKLT ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FSELEALHSS  180
SPGSSSAATT SNNPSPFLIS PPPATTTTNP AVVSSTAGIG IISNPMPISS VRVTQASPPT  240
IGIFPANPSA STAAMTAPVV SVQPAAAAVV RTATQLPTGI SFSSNSSSSS LGTNDDDDDD  300
EESLELEGEP SNVGSSRKRK RGSSSSSGTR RMMQFFENLM KQVMHKQEVM QQRFLEAIEK  360
SEQDRMIRDE AWKRQEMARL AREHEVMAQD RAISASRDAA IVTFLQKITG QTIQLPTPAP  420
PLSFPAAPPP PPVSQQAPIP TSTPAPAPAP TPTPTPTPPP SQPQQQQQQQ VHQHSQNFSR  480
VVLAVPEQQV PPQAQDIIMS GGGGSFEATS SSRWPKVEVL ALIKLRSGLE QRYQEAGPKG  540
PLWEEISARM HRMGYKRNPK RCKEKWENIN KYYKKVKESN KKRPEDAKTC PYFHELDALY  600
RKKILGGGST SGGGGTSTTS VNQNMPQQQQ ETIKQDTSDA PAAAIMPTPQ TQQQPLAATT  660
ASENKNGASS HVQAQTQTQT QSSNVGLPED LFGEGIGGAS KKKTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	5e-43	Trihelix family protein