PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899042.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 344aa MW: 38114.3 Da PI: 10.3292

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.1e-16	57	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ s++p++ +l+ XP_023899042.1 57 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARHVssrgNSTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 140 5***********************************65555555667888**************999986......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDHKEINKES PSLLSNHTTT TTNTTTIKED SPRKPFASGG GSGVVVGGSS DRLKRDEWSE 60 GAVSSLLEAY ENKWVLRNRA KLKGHDWEDV ARHVSSRGNS TKSPKTQTQC KNKIESMKKR 120 YRSESATADA SSWPLYPRLD LLLRGNGPVQ ALQPPPPPPP PPPPPVNPPL MLLEPSPVVV 180 LQPQPAAAAA PVPPQVGVTQ NSHGSNGVDR LAKEDGVGTK LSDQVSDKNH LETDSSTPAL 240 YNSDKDKLRS KKMKMKMEKK KRRRREELEI AESIRWLAEV VVRSEQTRMD TMREIERMRV 300 EAEAKRGEMD LKRTEILANT QLEIARLFAG IGKGVDSSLR IGRS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDHKEINKES PSLLSNHTTT TTNTTTIKED SPRKPFASGG GSGVVVGGSS DRLKRDEWSE  60
GAVSSLLEAY ENKWVLRNRA KLKGHDWEDV ARHVSSRGNS TKSPKTQTQC KNKIESMKKR  120
YRSESATADA SSWPLYPRLD LLLRGNGPVQ ALQPPPPPPP PPPPPVNPPL MLLEPSPVVV  180
LQPQPAAAAA PVPPQVGVTQ NSHGSNGVDR LAKEDGVGTK LSDQVSDKNH LETDSSTPAL  240
YNSDKDKLRS KKMKMKMEKK KRRRREELEI AESIRWLAEV VVRSEQTRMD TMREIERMRV  300
EAEAKRGEMD LKRTEILANT QLEIARLFAG IGKGVDSSLR IGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	262	KKMKMKMEKKKR
2	259	264	KKKRRR
3	259	265	KKKRRRR
4	260	265	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-101	Trihelix family protein