PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899435.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27594.3 Da PI: 8.9961

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_023899435.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP
2	K-box	92.1	9.6e-31	86	175	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ea + s+qqe+ +Lk+++e Lqr+qR+l+GedL++Ls k+L++Le+qL slk iRs++++++l+q+++lq+ke+ l+e+nk+L+++l+e XP_023899435.1 86 EALELSSQQEYLRLKARYEDLQRSQRNLMGEDLGPLSSKDLESLERQLAVSLKLIRSTRTQYMLDQLNDLQRKEHVLNEANKSLKQRLME 175 4555689*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST 60 SSMLKSLERY QKCNYGAPEP NVSTREALEL SSQQEYLRLK ARYEDLQRSQ RNLMGEDLGP 120 LSSKDLESLE RQLAVSLKLI RSTRTQYMLD QLNDLQRKEH VLNEANKSLK QRLMEGYELQ 180 LNPSVNDMGY GRQHAQPQSD FFHPLDCEPT LHIGYPSDQA VSVVTNSAPT LNNYMSGWMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-119	MIKC_MADS family protein