PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899445.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 178aa MW: 19993.7 Da PI: 7.4706

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	9.9e-39	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rrkCakdC+lap fp +++k+f n+hklFG+sn++k++++l+ +++++am+s+v+eA+ara+dPvyG++ ++++lq+q++ kae + XP_023899445.1 14 ACAACRYQRRKCAKDCPLAPFFPPHRQKDFLNAHKLFGVSNIVKTIRDLNSDQKKIAMHSIVFEANARANDPVYGCCPIMWELQRQYMFFKAEYD 108 7*******************************************************************************************998 PP DUF260 96 llkee 100 l+ ++ XP_023899445.1 109 LVLKQ 113 87665 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MNDKAGNSHN GSQACAACRY QRRKCAKDCP LAPFFPPHRQ KDFLNAHKLF GVSNIVKTIR 60 DLNSDQKKIA MHSIVFEANA RANDPVYGCC PIMWELQRQY MFFKAEYDLV LKQLSILHAQ 120 MASPSTFTSN IDVNTSHGKE AVGFVANDST HGKQPLEDVS EDIKPLLIFD DINDSTQC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-40	LBD family protein