PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023899958.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 304aa    MW: 34393.4 Da    PI: 7.725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023899958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  +++ +G g W+  +++ g++R++k+c++rw++yl
   XP_023899958.1 15 RGAWTALEDKILSAYIRAHGEGKWRYLPKRAGLKRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding50.74.3e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
   XP_023899958.1  68 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 112
                      78999*****************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MGRSPCCSKQ EGLNRGAWTA LEDKILSAYI RAHGEGKWRY LPKRAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ISHDEEELII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWN TTLGKKAKAQ  120
TSSPLAEQSP LRKSQDKKLA TKPNSTAAEP SNLVQASATP TQVIRTKARR CTKVLIPALP  180
SLNEHHSLYS TAIDPLEPQA LQSQPQNYHQ DSAKCEARGG TEELHETCAQ DSDFFNFSSN  240
EFQANHGDRN GDCNFNSSNI QGPDQSLPFD ETMFKDWTTN YCLEDNFNLD IESLTFLLDS  300
EEWP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-62MYB family protein