PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899961.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 460aa MW: 50186.4 Da PI: 8.5901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_023899961.1 59 CEICGKGFQRDQNLQLHRRGH 79 *******************88 PP
2	zf-C2H2	11.1	0.0013	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C k++ +s+ k H +t+ XP_023899961.1 133 WKCEKCAKRYAVQSDWKAHSKTC 155 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MLENMAEEAL PNGFVENPIA GSNPPASKKK RNQPGNPDPE AEVIALSPKT LMATNRFLCE 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKRVYVC PEKSCVHHHA SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCAK RYAVQSDWKA HSKTCGTREY KCDCGTIFSR RDSFITHRAF 180 CDALAEETAR LNAASNMNNA VANNINYHFM GTPLGPSMAQ HFSSIFKPIS SNDEAINQTT 240 RELSLWMGQG SSQGHESIGN NNLHGIHQLG SVSSGTIFGD PLISCSNPPP SDYQLNWVFG 300 TKLSSSNAEE LTASNSLPLT DVKEAGTQPL SVPSLYSTQH QSHQTPSANM SATALLQKAA 360 QIGVTTADSS FLGSFGLKCS DSQVRDGNKL CGVLYGTSNP ILSTNIGNDV ENSAGDLLQV 420 HPAKRRHTMN EESGGGGQTR DFLGVGVQTI CHPSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MLENMAEEAL PNGFVENPIA GSNPPASKKK RNQPGNPDPE AEVIALSPKT LMATNRFLCE  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKRVYVC PEKSCVHHHA SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCAK RYAVQSDWKA HSKTCGTREY KCDCGTIFSR RDSFITHRAF  180
CDALAEETAR LNAASNMNNA VANNINYHFM GTPLGPSMAQ HFSSIFKPIS SNDEAINQTT  240
RELSLWMGQG SSQGHESIGN NNLHGIHQLG SVSSGTIFGD PLISCSNPPP SDYQLNWVFG  300
TKLSSSNAEE LTASNSLPLT DVKEAGTQPL SVPSLYSTQH QSHQTPSANM SATALLQKAA  360
QIGVTTADSS FLGSFGLKCS DSQVRDGNKL CGVLYGTSNP ILSTNIGNDV ENSAGDLLQV  420
HPAKRRHTMN EESGGGGQTR DFLGVGVQTI CHPSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-157	C2H2 family protein