PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900281.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 998aa MW: 111531 Da PI: 7.8018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.9	7e-10	210	274	16	81
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++e+ +rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y XP_023900281.1 210 QLESGQSRGKTRADKDKEVADFLQRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 274 45566668999*******************************************9965555.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence
MGDKGDTTKK QPQQPQQKQI STSPKDPLEE STESRPHHHQ QSPPVVVAKG ASPFISVPLY 60 VPSGATSSPF EQQFEAVNPK RPRYTGQWKL LPSPTSQQKQ TQLAMLSSES SPSPTTHATN 120 PRTQQHHTTA ASSSDTASSP SHSPMPSMSA ASGQDTDKLE GEQAHHQFRK GKYVSPVWKP 180 NEMLWLARAW RIQYQGGSDI GSGSSSRAEQ LESGQSRGKT RADKDKEVAD FLQRHGVNRD 240 AKTAGTKWDN MLGEFRKVYE WERGGEREQV GKSYFRLSPY ERKLHRLPAS FDEEVFEELS 300 QFMGSRMRSS QSRGSLGIVA GDDSRTVLTG TRALPPPPPF KDDELPLSGC FVICAARAKQ 360 LVMTSGNEPL FHGTRGTLLG FESPLDIVGA SSSSLSKELR RIGKIRMTWE ESVSLWAEEG 420 EHHRGRVRLQ GSSFLNADEL TFFDDSTVPC NMETFEDGPL KGFSVDRFVS GQQVKVFGRR 480 KASSTAYSGF TERVQLPFTE PSIRSIPPWE YQDPTEYYVG CLRVPPPTLP SLFELSSHLQ 540 EPPPEELRFP LRRDVYRDLP LGKEHFFTIS TELLDCRTFI YDILSPIIRT NPSISSATFT 600 SRDSFIGIWD DCINKIVSKF CSVEMVVIRK PSSASTEMLQ DQWPNVTGFV RNFCLWRGEE 660 ADKSRDEALD PSSSIAEKLL WTYRDLPYIL GYYAVGYLVT ICALTRAQDR IIRTDLCLLD 720 LSSPVERLKA LVPCYRIAGL LPLLADRCFN NINNSGGNYK QLFAYSDFER LDLGNGNFIE 780 MTPNTVTRIF SSKRRWTAVK EIYDFLDQRI PHAEFIFRSS EKDLALVFKP RGCKFKPTNC 840 DQLVEALKYV TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFVCGFEEA VGAPQIYPHG 900 AAAAASGGIG DAAARGRHAP EMGRGLHGVK VDVWGVGYLV KTSGLGGNGV VGGVPKMLRE 960 LQNRCLDQNP EQRPTAADCY HHLLQLQSSL SASSGGGY

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence

MGDKGDTTKK QPQQPQQKQI STSPKDPLEE STESRPHHHQ QSPPVVVAKG ASPFISVPLY  60
VPSGATSSPF EQQFEAVNPK RPRYTGQWKL LPSPTSQQKQ TQLAMLSSES SPSPTTHATN  120
PRTQQHHTTA ASSSDTASSP SHSPMPSMSA ASGQDTDKLE GEQAHHQFRK GKYVSPVWKP  180
NEMLWLARAW RIQYQGGSDI GSGSSSRAEQ LESGQSRGKT RADKDKEVAD FLQRHGVNRD  240
AKTAGTKWDN MLGEFRKVYE WERGGEREQV GKSYFRLSPY ERKLHRLPAS FDEEVFEELS  300
QFMGSRMRSS QSRGSLGIVA GDDSRTVLTG TRALPPPPPF KDDELPLSGC FVICAARAKQ  360
LVMTSGNEPL FHGTRGTLLG FESPLDIVGA SSSSLSKELR RIGKIRMTWE ESVSLWAEEG  420
EHHRGRVRLQ GSSFLNADEL TFFDDSTVPC NMETFEDGPL KGFSVDRFVS GQQVKVFGRR  480
KASSTAYSGF TERVQLPFTE PSIRSIPPWE YQDPTEYYVG CLRVPPPTLP SLFELSSHLQ  540
EPPPEELRFP LRRDVYRDLP LGKEHFFTIS TELLDCRTFI YDILSPIIRT NPSISSATFT  600
SRDSFIGIWD DCINKIVSKF CSVEMVVIRK PSSASTEMLQ DQWPNVTGFV RNFCLWRGEE  660
ADKSRDEALD PSSSIAEKLL WTYRDLPYIL GYYAVGYLVT ICALTRAQDR IIRTDLCLLD  720
LSSPVERLKA LVPCYRIAGL LPLLADRCFN NINNSGGNYK QLFAYSDFER LDLGNGNFIE  780
MTPNTVTRIF SSKRRWTAVK EIYDFLDQRI PHAEFIFRSS EKDLALVFKP RGCKFKPTNC  840
DQLVEALKYV TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFVCGFEEA VGAPQIYPHG  900
AAAAASGGIG DAAARGRHAP EMGRGLHGVK VDVWGVGYLV KTSGLGGNGV VGGVPKMLRE  960
LQNRCLDQNP EQRPTAADCY HHLLQLQSSL SASSGGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein