PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900294.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 473aa MW: 54327.6 Da PI: 7.0396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.3e-09	28	77	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +Er+RR+++ s ++ Lr llP + ++K s + +A +YIk++ XP_023900294.1 28 IMRRDIERQRREQMASLYSSLRLLLPLEF--IKGKRSALDLINEAANYIKHM 77 56778********************65..******************8 PP
2	HLH	13.1	0.00018	322	370	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + Er+RR+++ + L +llP + ++K s ++ +A++YI +L XP_023900294.1 322 MRRDTERQRRKKMAILNASLLSLLPMEM--IKGKRSASDHTNEAMNYITYL 370 56678*******************63..*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MSKGWSHKLL ATPDNNEENL SNNNERKIMR RDIERQRREQ MASLYSSLRL LLPLEFIKGK 60 RSALDLINEA ANYIKHMTEK IQGLQVERDQ LKNLSNSTAF IPGIESWNNC SLNYATVRVS 120 EAGVEILMSS WLREEGFLLS KVLELLLEEG LSVIRCASNK TNERLFLTIQ SEVCDPTCFN 180 LSELQQKLNA MCNYGLDEEA NFTAVFGMEG RGVKEKELEG RDYFSAVWLE KMEGKEKKLN 240 PPGPPISIRP NWIEMKRKVF EITILPILLT CPTNRGMKVV WQFSSIPHQE ERMPQYQVPD 300 QCLTHQILDN DEANTIINKK IMRRDTERQR RKKMAILNAS LLSLLPMEMI KGKRSASDHT 360 NEAMNYITYL KNKIQELSVR RNELKNLSNL SEVQPCCDGV QILVTTNVNE GLLLSEVLEI 420 LLREGLDVVH CFSSRENERL IYSIQSKGND LGCLDLSGLQ QKLNDLILSS RYI

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MSKGWSHKLL ATPDNNEENL SNNNERKIMR RDIERQRREQ MASLYSSLRL LLPLEFIKGK  60
RSALDLINEA ANYIKHMTEK IQGLQVERDQ LKNLSNSTAF IPGIESWNNC SLNYATVRVS  120
EAGVEILMSS WLREEGFLLS KVLELLLEEG LSVIRCASNK TNERLFLTIQ SEVCDPTCFN  180
LSELQQKLNA MCNYGLDEEA NFTAVFGMEG RGVKEKELEG RDYFSAVWLE KMEGKEKKLN  240
PPGPPISIRP NWIEMKRKVF EITILPILLT CPTNRGMKVV WQFSSIPHQE ERMPQYQVPD  300
QCLTHQILDN DEANTIINKK IMRRDTERQR RKKMAILNAS LLSLLPMEMI KGKRSASDHT  360
NEAMNYITYL KNKIQELSVR RNELKNLSNL SEVQPCCDGV QILVTTNVNE GLLLSEVLEI  420
LLREGLDVVH CFSSRENERL IYSIQSKGND LGCLDLSGLQ QKLNDLILSS RYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	9e-30	bHLH family protein