PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023900519.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 337aa    MW: 38932.8 Da    PI: 8.9311
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023900519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+++  r+ tf kR++g++KKA+E S+LC+++ ++ii++++
  XP_023900519.1 10 LIKSEKSRNMTFQKRKKGLMKKAYEFSTLCGVQTCMIIYGPK 51
                    59999***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MGRGKLPMEL IKSEKSRNMT FQKRKKGLMK KAYEFSTLCG VQTCMIIYGP KLQERPMELE  60
TWPQNRDEVV ERIKKYNENM VHKRPRGSTT LSDFFIERNK KVEIEILRLR KNIFKAKYPT  120
FDDRIETLPE DQLAVVLDVL DAKFEAVTRA TKMLQGKHLM IEKSSTSGNM LGGHVPHHPE  180
LMRNHYDSLQ MQALQCQDSS IKPLDIQFPT QFQSPQGSQM VPINTSHYGD HMDNSFMNLL  240
YAAEWTQFNP VSSNNIVPYA PLNDTSNYNI MPGMLENTVL SNPSASMNYY DLTKRFTVPQ  300
HVPYPMLPSI SSQTPSFQVN ELYDISQFDM KNKNAMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-22M-type_MADS family protein