PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900530.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 437aa MW: 48513.7 Da PI: 6.6462

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.4	2.4e-15	59	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++ +e Aa ++ a++k++g XP_023900530.1 59 SIYRGVTRHRWTGRYEAHLWDkSSWNNiqnKKgRQVYLGAYDNEEAAAHTYDLAALKYWG 118 57*****************777799977447***********************98 PP
2	AP2	52.8	9.9e-17	161	213	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g+ XP_023900530.1 161 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDMAAIEYRGA 213 89**99******99966...3.6***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MKRSPAPSCS SSSSSSCVGS VIPHQSEKPK AKAKRAKKNH NPEKCQNGNS SAGSARRSSI 60 YRGVTRHRWT GRYEAHLWDK SSWNNIQNKK GRQVYLGAYD NEEAAAHTYD LAALKYWGPG 120 TTLNFPIETY TKELEEMQKV TKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG 180 RVFGNKYLYL GTYNTQEEAA AAYDMAAIEY RGANAVTNFD ISNYIDRMKK KIPGFNAQSS 240 PQSDAALPKN CHTQSKVDVD NCQPQPKVDA EVEHQQQQQK QEKQEVVGLE EQLQYNINTQ 300 LPPCMGTTST MVGMGPSSEQ EEDPWSFLDN VPDLPIEKPC ELNDLFDHTG FEDDIDFIFE 360 AAAAAVTHQD VVDVKMDGIM DDMSAFDETL KVVGVSRSLD NIVGQERLLS SSSSSSSSAI 420 SSPSSSTTTS VSCIYSA

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MKRSPAPSCS SSSSSSCVGS VIPHQSEKPK AKAKRAKKNH NPEKCQNGNS SAGSARRSSI  60
YRGVTRHRWT GRYEAHLWDK SSWNNIQNKK GRQVYLGAYD NEEAAAHTYD LAALKYWGPG  120
TTLNFPIETY TKELEEMQKV TKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG  180
RVFGNKYLYL GTYNTQEEAA AAYDMAAIEY RGANAVTNFD ISNYIDRMKK KIPGFNAQSS  240
PQSDAALPKN CHTQSKVDVD NCQPQPKVDA EVEHQQQQQK QEKQEVVGLE EQLQYNINTQ  300
LPPCMGTTST MVGMGPSSEQ EEDPWSFLDN VPDLPIEKPC ELNDLFDHTG FEDDIDFIFE  360
AAAAAVTHQD VVDVKMDGIM DDMSAFDETL KVVGVSRSLD NIVGQERLLS SSSSSSSSAI  420
SSPSSSTTTS VSCIYSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-97	AP2 family protein