PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023900538.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 323aa    MW: 36379.1 Da    PI: 6.8313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023900538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_023900538.1 13 RGLWSPEEDEKLVNYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding51.42.5e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_023900538.1  66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGHHCCSKQK VKRGLWSPEE DEKLVNYITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLPS HKTNDIHNNG CNFSHTNPKP TSLFSVNSLM TDASVNMNTP FSTLLSSPPT  180
DNNFSSPTIP IYELLNPNAV WTNQEQNPSS LMGSASSVSS SLLNPSGFDC VQENCMWSGS  240
FQPMEITKQD EMLQPEQQVL KPQLEMKDSE VEIKKADKLS DEQNNMAASF VNSNFDFGFM  300
ESTLMPCGMF YNGSPMDQFA WDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-87MYB family protein