PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900599.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 692aa MW: 75763.2 Da PI: 5.4529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	513	558	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_023900599.1 513 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 558 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MTDYRLTTTT PMNLWTSDDN ASVIESFMSS DLSPFWPAPP SQQPQLHHQL SSAASTSTPA 60 PAPIVSQSQP SVALFNQDTL QQRLQALIEG ARESWTYAIF WQSSYDYSSS ASVLGWGDGY 120 YKGEDDKSKS KAKNKASSSA AEQEHRKKVL RELNSLISGS ATPATDDAID EEVTDTEWFF 180 LVSMTQSFVN GDGLPGQAFF NSNPIWVTGA DRLASSPCDR ARQGQVFGLQ TMVCIPSANG 240 VVELGSTEVI FQSSDLMNKV RVLFNFNSLE MGSWPINDQG ENDPSSLWLN DPTSTPPVAT 300 ATEIKDSLNN NSTVTVPSVP GATATTTNNL QISKGIPFEN PSSSSLTENP SAIHIQNSNQ 360 SRQQQAQNEG FFTRELNFSD YGYDNNSVVK NGNNSISTMK PESGEILNFG ESKRSSYVSG 420 HSQFAAEESN KKKRSPTSRG SNEEGMLSFT SGVILSSSCV VKSSGGVGTA DSDHSDLEAS 480 VVKEADSSRV VDPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS 540 KMDKASLLGD AISYINELKG KLQSSDSEKE EMQKQLDALK KELASKDSRY PGSGSPPLLP 600 DHDPKMSKLI DLDIDVKIIG WDAMIRIQCS KKNHPAARLM VALKELDLDV HHASVSVVND 660 LMIQQATVKM GSRFYTQDQL RLALSAKVGD CR

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MTDYRLTTTT PMNLWTSDDN ASVIESFMSS DLSPFWPAPP SQQPQLHHQL SSAASTSTPA  60
PAPIVSQSQP SVALFNQDTL QQRLQALIEG ARESWTYAIF WQSSYDYSSS ASVLGWGDGY  120
YKGEDDKSKS KAKNKASSSA AEQEHRKKVL RELNSLISGS ATPATDDAID EEVTDTEWFF  180
LVSMTQSFVN GDGLPGQAFF NSNPIWVTGA DRLASSPCDR ARQGQVFGLQ TMVCIPSANG  240
VVELGSTEVI FQSSDLMNKV RVLFNFNSLE MGSWPINDQG ENDPSSLWLN DPTSTPPVAT  300
ATEIKDSLNN NSTVTVPSVP GATATTTNNL QISKGIPFEN PSSSSLTENP SAIHIQNSNQ  360
SRQQQAQNEG FFTRELNFSD YGYDNNSVVK NGNNSISTMK PESGEILNFG ESKRSSYVSG  420
HSQFAAEESN KKKRSPTSRG SNEEGMLSFT SGVILSSSCV VKSSGGVGTA DSDHSDLEAS  480
VVKEADSSRV VDPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS  540
KMDKASLLGD AISYINELKG KLQSSDSEKE EMQKQLDALK KELASKDSRY PGSGSPPLLP  600
DHDPKMSKLI DLDIDVKIIG WDAMIRIQCS KKNHPAARLM VALKELDLDV HHASVSVVND  660
LMIQQATVKM GSRFYTQDQL RLALSAKVGD CR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	503	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein