PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900669.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

M-type_MADS

Protein Properties

Length: 406aa MW: 43798.3 Da PI: 7.3189

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45	1.4e-14	11	53	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+s r+ +f kRr g+lKK +EL +LC++++ v+i++++++ XP_023900669.1 11 IVNDSARKASFKKRRVGLLKKVSELTTLCGVNAFVVIYGPDNE 53 6799************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MTRKKVKLMW IVNDSARKAS FKKRRVGLLK KVSELTTLCG VNAFVVIYGP DNEEPAAWPS 60 RQVVQQLLTR FQGVPEMERH KKMMNQETYL RERATKTQEQ LRKQQRKNKE MEMGHLMHQV 120 DQGKGLAELE LCEMTGLAWM LEEKIKENRK RMDYFQQVSG APGSMPPPPP DSDDTGRAGG 180 STADQGRAPT ESYMWEPWFV EMIRQHEKKA AASNSSVRSD MGLPPNSYIG GPSGASDMGP 240 IPYGNYGGTG GGIEMGLPYG DFIGASSTGG SEMGVLPYGN YGINSGVNVN DHMELPHGNY 300 GATGGGNNMG MGFPYHGNMR GGAAGGDMEV GMMPHGGNIG SGGGGSDMGL PGYYGGGSTG 360 PGSDAGLPYD VTKSWQQRSI TGPGSDAGLP LPYDVTKPWQ AHFFNP

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MTRKKVKLMW IVNDSARKAS FKKRRVGLLK KVSELTTLCG VNAFVVIYGP DNEEPAAWPS  60
RQVVQQLLTR FQGVPEMERH KKMMNQETYL RERATKTQEQ LRKQQRKNKE MEMGHLMHQV  120
DQGKGLAELE LCEMTGLAWM LEEKIKENRK RMDYFQQVSG APGSMPPPPP DSDDTGRAGG  180
STADQGRAPT ESYMWEPWFV EMIRQHEKKA AASNSSVRSD MGLPPNSYIG GPSGASDMGP  240
IPYGNYGGTG GGIEMGLPYG DFIGASSTGG SEMGVLPYGN YGINSGVNVN DHMELPHGNY  300
GATGGGNNMG MGFPYHGNMR GGAAGGDMEV GMMPHGGNIG SGGGGSDMGL PGYYGGGSTG  360
PGSDAGLPYD VTKSWQQRSI TGPGSDAGLP LPYDVTKPWQ AHFFNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLMWIVNDSARKASFKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-38	M-type_MADS family protein