PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900703.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 456aa MW: 49084.3 Da PI: 8.4199

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	66	92	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023900703.1 66 PGEPDCSYYIRTGLCRFGATCRFNHPP 92 5789*********************97 PP
2	zf-CCCH	38.8	1.6e-12	113	137	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023900703.1 113 QPECQYYLKTGTCKFGATCKFHHPR 137 799********************96 PP
3	zf-CCCH	37	5.6e-12	159	183	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_023900703.1 159 EAECAYYLRTGQCKFGNTCKFHHPQ 183 689********************97 PP
4	zf-CCCH	39.1	1.3e-12	317	343	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG CkyG+ C+F+H++ XP_023900703.1 317 PGQPECQFYMKTGDCKYGAVCRFHHPR 343 5789*********************96 PP
5	zf-CCCH	40.1	6.1e-13	363	389	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023900703.1 363 PGEPLCIFYSRYGICKFGPSCKFDHPM 389 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEFEAGIPMS RAAAAAAAAA AAAAAAAAAA VSVTEPPSLS PNPDAMWQMN LRSSETMESG 60 PYPERPGEPD CSYYIRTGLC RFGATCRFNH PPNRKLAIAT ARMKGEFPER IGQPECQYYL 120 KTGTCKFGAT CKFHHPRDKA GIAGRVALNI LGYPLRPNEA ECAYYLRTGQ CKFGNTCKFH 180 HPQPTNMMVS LNGSTVYPTV QSPTTGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLLLH 240 QGMVSVPGWN AYGGQLGSVS SSETQQQTVA NSQIYGTSRQ GESTSAGSQG TFSPFRSGSV 300 PVGFYALQRE NVFPERPGQP ECQFYMKTGD CKYGAVCRFH HPRERLIPAP DCVLSTIGLP 360 LRPGEPLCIF YSRYGICKFG PSCKFDHPMG IFAYNISASS SADAPVRRLL GSSSGTAALN 420 LSSEGLVDAG SAKPRRLSLS ESRQMPSGDD NIDTEE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEFEAGIPMS RAAAAAAAAA AAAAAAAAAA VSVTEPPSLS PNPDAMWQMN LRSSETMESG  60
PYPERPGEPD CSYYIRTGLC RFGATCRFNH PPNRKLAIAT ARMKGEFPER IGQPECQYYL  120
KTGTCKFGAT CKFHHPRDKA GIAGRVALNI LGYPLRPNEA ECAYYLRTGQ CKFGNTCKFH  180
HPQPTNMMVS LNGSTVYPTV QSPTTGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLLLH  240
QGMVSVPGWN AYGGQLGSVS SSETQQQTVA NSQIYGTSRQ GESTSAGSQG TFSPFRSGSV  300
PVGFYALQRE NVFPERPGQP ECQFYMKTGD CKYGAVCRFH HPRERLIPAP DCVLSTIGLP  360
LRPGEPLCIF YSRYGICKFG PSCKFDHPMG IFAYNISASS SADAPVRRLL GSSSGTAALN  420
LSSEGLVDAG SAKPRRLSLS ESRQMPSGDD NIDTEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein