PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023900830.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25063.6 Da    PI: 9.5113
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023900830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.8e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_023900830.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAIIIFSPRGKLYEFAS 59
                    8***********************************************86 PP
2K-box83.83.8e-2876170397
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++++++  e+++++l++e+a + k+ie L+ ++R+llGe+L+++sl+eLqq+e+qLe+s+++iR++K ++++eqie+l++ke+ l  en +L +k
  XP_023900830.1  76 AQTNNKSIEQNMQHLKHEAATMMKKIEHLEVSKRRLLGEGLGTCSLEELQQIEEQLERSVSSIRARKAQVFKEQIEQLKEKERVLAAENARLCEK 170
                     4566668999********************************************************************************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAIIIFSP RGKLYEFASF  60
SMQETIERYR RHTKDAQTNN KSIEQNMQHL KHEAATMMKK IEHLEVSKRR LLGEGLGTCS  120
LEELQQIEEQ LERSVSSIRA RKAQVFKEQI EQLKEKERVL AAENARLCEK CGIQPQQGSN  180
EPREIIPYEE SSPSSDVETE LFIGPPEGRT KRSRLQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-88MIKC_MADS family protein