PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900834.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 159aa MW: 18598.4 Da PI: 10.3482

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.6	2.1e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_023900834.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAIIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	74.7	2.6e-25	76	158	3	85
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 ++++++ e+++++l++e+a + k+ie L+ ++R+llGe+L+++sl+eLqq+e+qLe+s+++iR++K ++++eqie+l+++++ XP_023900834.1 76 AQTNNKSIEQNMQHLKHEAATMMKKIEHLEVSKRRLLGEGLGTCSLEELQQIEEQLERSVSSIRARKAQVFKEQIEQLKERNE 158 4566668999*********************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAIIIFSP RGKLYEFASF 60 SMQETIERYR RHTKDAQTNN KSIEQNMQHL KHEAATMMKK IEHLEVSKRR LLGEGLGTCS 120 LEELQQIEEQ LERSVSSIRA RKAQVFKEQI EQLKERNES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-80	MIKC_MADS family protein