PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901119.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YC

Protein Properties

Length: 285aa MW: 32060.4 Da PI: 4.5803

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.8	1e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++aded+ +i+ +P l+ska elf+ +l +++ + + +t++ ++++v+ ++fdfl di+ + XP_023901119.1 6 DTRFPAARIKKIMQADEDIGKIAMAVPPLVSKALELFLQDLCAQTYEITLKRGAKTMNSLHLKQCVQAFNVFDFLNDIISK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDIGKIAMA VPPLVSKALE LFLQDLCAQT YEITLKRGAK 60 TMNSLHLKQC VQAFNVFDFL NDIISKVPDL GGSEGAGEYR SVAKRRKITD NVENDSDDES 120 KRHKMHDAVH SSSSGRGRGR GRGRGRGRGR GTQTVERETT AQYEKFEDDP DDSEHDEKLN 180 QSLERLDNGS ETKEWKENIL AVKSEEAPVR NFDLNMDLDE NGDSTTAAAV PASSSAEPIP 240 EIKPEEYPDW SESEMKNIAI DPVRLANLSR RIDEDEDEED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG
6	140	150	RGRGRGRGRGR
7	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-61	NF-YC family protein