PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901209.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 345aa MW: 38602.9 Da PI: 8.0176

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G +W++++++ g+ R++k+c++rw +yl XP_023901209.1 14 RGLWSPEEDEKLMNYISTHGHSSWTSVPKHAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46.1	1.2e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E +++++++ lG++ W+ Ia++++ gRt++++k++w+++l XP_023901209.1 67 RGSFSFQEAAIIKELHNILGNK-WSQIAKHLP-GRTDNEIKNFWHSHL 112 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MRSHSCCDKQ KVRRGLWSPE EDEKLMNYIS THGHSSWTSV PKHAGLQRCG KSCRLRWINY 60 LRPGLKRGSF SFQEAAIIKE LHNILGNKWS QIAKHLPGRT DNEIKNFWHS HLKKKLMFHA 120 VKIPGALANC PEIDHPISSE KGFSPLNANP NLILHSQQDQ LHHPAPITIL QGLVLGDLEL 180 QHTNCCPTLV NFPPLIPPVL SDSSSYATWS SLGYDQPYQP APNQHDQNFS KGVTPHDTSG 240 PMINPSIKET PYDNPEFSSK FMSFAPPFPQ LLHQSASLSF SPFGSYSFDH SQVQSIQMEY 300 TDAIISPLPS SCLLPSPSSL TASLLPPLQR CQFLSTPNLS SIWEP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MRSHSCCDKQ KVRRGLWSPE EDEKLMNYIS THGHSSWTSV PKHAGLQRCG KSCRLRWINY  60
LRPGLKRGSF SFQEAAIIKE LHNILGNKWS QIAKHLPGRT DNEIKNFWHS HLKKKLMFHA  120
VKIPGALANC PEIDHPISSE KGFSPLNANP NLILHSQQDQ LHHPAPITIL QGLVLGDLEL  180
QHTNCCPTLV NFPPLIPPVL SDSSSYATWS SLGYDQPYQP APNQHDQNFS KGVTPHDTSG  240
PMINPSIKET PYDNPEFSSK FMSFAPPFPQ LLHQSASLSF SPFGSYSFDH SQVQSIQMEY  300
TDAIISPLPS SCLLPSPSSL TASLLPPLQR CQFLSTPNLS SIWEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-67	MYB family protein