PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901238.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 436aa MW: 46420.6 Da PI: 10.1715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.6	5.2e-16	92	179	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++++pk qCk++++ ++k+yk +k++ ++ + s++p+f++l+ XP_023901238.1 92 CWSEGATAVLIDAWGERYLQLSRGNLKQKHWKEVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKARIASG--GGPSKWPFFEKLD 179 7***********************************856666666644449****************97..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MEEDEEIHSP QQSPDSESPA ASSSPPRPPT NGRITVTVAS APPQAQPPPQ SHHHHHNNNN 60 NTLTLALPIQ QPRSSGSGAG GSGGGGGGRE DCWSEGATAV LIDAWGERYL QLSRGNLKQK 120 HWKEVADIVS SREDYRKTPK TDIQCKNRID TVKKKYKLEK ARIASGGGPS KWPFFEKLDH 180 LIGPTAKIPL ATLPKVPVGI PVGNRSSAAA AAAAAAAASQ YSNSQMFNKQ LSNSNSNTKQ 240 KKLELVLRNS GGSGSGSGSG GGVGVGGGQR FQMFKKRGGA ETDSDSELEA EERDSMDSLP 300 PPVMTRTERK RPRMMVMGGR GGGNVERKER GGGGGGGWGN AVRELTRAIL RFGEAYEQAE 360 SAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQLEISQLK HGGGGKRGGG GGCGGGVGNA 420 SNYHSNNNNN NSDDSN

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MEEDEEIHSP QQSPDSESPA ASSSPPRPPT NGRITVTVAS APPQAQPPPQ SHHHHHNNNN  60
NTLTLALPIQ QPRSSGSGAG GSGGGGGGRE DCWSEGATAV LIDAWGERYL QLSRGNLKQK  120
HWKEVADIVS SREDYRKTPK TDIQCKNRID TVKKKYKLEK ARIASGGGPS KWPFFEKLDH  180
LIGPTAKIPL ATLPKVPVGI PVGNRSSAAA AAAAAAAASQ YSNSQMFNKQ LSNSNSNTKQ  240
KKLELVLRNS GGSGSGSGSG GGVGVGGGQR FQMFKKRGGA ETDSDSELEA EERDSMDSLP  300
PPVMTRTERK RPRMMVMGGR GGGNVERKER GGGGGGGWGN AVRELTRAIL RFGEAYEQAE  360
SAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQLEISQLK HGGGGKRGGG GGCGGGVGNA  420
SNYHSNNNNN NSDDSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	402	412	GGGGKRGGGGG
2	403	413	GGGGKRGGGGG
3	404	414	GGGGKRGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-77	Trihelix family protein