PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901996.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24189.6 Da PI: 6.3046

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.7	9.9e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskR+ g++KKA+ELS+LCdae+ +++fs tgkl+e++s XP_023901996.1 9 KKIDNMTARQVTFSKRKRGLFKKAFELSTLCDAEIGLMVFSATGKLFEFAS 59 68***********************************************86 PP
2	K-box	43.1	1.8e-15	93	170	20	97
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +a L keie+ +e+ ++ Ge+L ++++eLq+Le++Le +l+++ ++K e +le+i lq+k +l+een++L+++ XP_023901996.1 93 SYAMLSKEIEEKTHELSKIRGEELPGMDIEELQKLEKELEVALSRVIETKGERFLEEITALQQKGAQLREENQRLKQM 170 5788999999999**************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MTRRKIQIKK IDNMTARQVT FSKRKRGLFK KAFELSTLCD AEIGLMVFSA TGKLFEFASS 60 SMQQVIERHN LHPNNLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHELSK IRGEELPGMD 120 IEELQKLEKE LEVALSRVIE TKGERFLEEI TALQQKGAQL REENQRLKQM ENLFSTQTYV 180 LEQGQSSESI TNICSSSDPQ NNDSSKISLK LG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-68	MIKC_MADS family protein