PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023902344.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 529aa MW: 58051.6 Da PI: 8.5943

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023902344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.2e-17	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++v+++G g+W+++ r g+ R++k+c++rw ++l XP_023902344.1 34 KGPWTAAEDAILVEYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 81 79******************************************9986 PP
2	Myb_DNA-binding	51.9	1.7e-16	87	130	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ XP_023902344.1 87 KGAFTPEEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 130 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MATKNSTGGL ATSEGGGSST GGAESGLGGA TLKKGPWTAA EDAILVEYVR KHGEGNWNAV 60 QRNSGLARCG KSCRLRWANH LRPNLKKGAF TPEEERLILE LHAKYGNKWA RMAAQLPGRT 120 DNEIKNYWNT RVKRRQRQGL PLYPHDIQPS SQTQSPNQTQ TQTQLQLQHQ YQSQSTPTTP 180 TTPTAPTTPT TPTTPTFHFQ SHAHHHPSFS LSPTPPPPPP THHQHHSFSL SPSKPQHFTT 240 NTSTSLPLFD PTNNSNTNTT PSSFTFHRPP PILGAPVRFK RYRETTGFSL PLSPAPHTTP 300 TTTTTTNNNN NMITSPTSIT PLGQLSSTQF PDISCFKFPL TYSHSAPQLI STQLELDQMM 360 SAYSMKQELP SSQLSPHHHH HHPPPPHPPP PATTMSEITI DTKGLRTQSF LGVKEEKRVF 420 EGFKHWEGSS TIDCSPGVKP KEEPGVQINT MQEDLSKLLN VIPSTMQIPS DWYSDSGEVS 480 NGQSSGVTDE NIGIDMQHIA SLFPLGATTD HSHSRTTGSC SWDNLPGIC

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MATKNSTGGL ATSEGGGSST GGAESGLGGA TLKKGPWTAA EDAILVEYVR KHGEGNWNAV  60
QRNSGLARCG KSCRLRWANH LRPNLKKGAF TPEEERLILE LHAKYGNKWA RMAAQLPGRT  120
DNEIKNYWNT RVKRRQRQGL PLYPHDIQPS SQTQSPNQTQ TQTQLQLQHQ YQSQSTPTTP  180
TTPTAPTTPT TPTTPTFHFQ SHAHHHPSFS LSPTPPPPPP THHQHHSFSL SPSKPQHFTT  240
NTSTSLPLFD PTNNSNTNTT PSSFTFHRPP PILGAPVRFK RYRETTGFSL PLSPAPHTTP  300
TTTTTTNNNN NMITSPTSIT PLGQLSSTQF PDISCFKFPL TYSHSAPQLI STQLELDQMM  360
SAYSMKQELP SSQLSPHHHH HHPPPPHPPP PATTMSEITI DTKGLRTQSF LGVKEEKRVF  420
EGFKHWEGSS TIDCSPGVKP KEEPGVQINT MQEDLSKLLN VIPSTMQIPS DWYSDSGEVS  480
NGQSSGVTDE NIGIDMQHIA SLFPLGATTD HSHSRTTGSC SWDNLPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-70	MYB family protein