PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023902473.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 319aa    MW: 36532.2 Da    PI: 10.0872
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023902473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.6e-1947143286
        trihelix   2 WtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     Wt qe+l Li+a++ +eer  +                 + +W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e+k  + s +++p + 
  XP_023902473.1  47 WTVQETLILITAKKLDEERRVKPTqtppdptkppfkpGSELRWKWVENYCWNHGCLRSQTQCNDKWDNLLREYKKVRDYESKS-NSSNESFPSYW 140
                     *************977776665323567777788877999*****************************************96.66667899999 PP

        trihelix  84 qle 86 
                     +le
  XP_023902473.1 141 DLE 143
                     997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MSDPPKTLKP LNIPPLKPPI TTTTTTTTTT TITTSSPLLR EHRKGNWTVQ ETLILITAKK  60
LDEERRVKPT QTPPDPTKPP FKPGSELRWK WVENYCWNHG CLRSQTQCND KWDNLLREYK  120
KVRDYESKSN SSNESFPSYW DLERQHRKDR NLPSNMSFEV FQALNQVLQR RYSQTSVQPA  180
KPVVSFARSP APVTVLPPNL QAPTTETTVP PVVSEKSDSS ETESSEMHDS SSKRRKVRRS  240
IGSTIMRSAS VLAQTFRDCE EKKEKRHQEV MELEQRRLQI EERRNEVNSQ GMTRLVAAMT  300
NLSGAIQSLI SASHDNANM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233265KRRKVRRSIGSTIMRSASVLAQTFRDCEEKKEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-40Trihelix family protein