PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023902988.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 544aa MW: 60414.5 Da PI: 6.9006

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023902988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_023902988.1 7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MGKQGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RYSRVKSISV NKNKEVKLLK RKQNSDNMMV GGGAPDYNQG FRKVIDEDTS NRSSSGSAIS 120 NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCVSRP KQSPVEKLTK DLYTILHEQQ 180 SSYFSASSED DLLFESETPM VSVEIGHGSV LIRHPSSIVR EEESEASSLS VENKQFPSNE 240 AYSHYSITSV HNGSKGVNFP SAGVEKIKNH AGQGMQPEHL KRDKSQNENL QILASHNSPL 300 CNIDLNDVLN FEELMRNLTN EEQQQLLKYL SPVDTLKVPD SLKSTFDSPQ FKENLIYFQQ 360 LLVEGVFDNS FSGAKSEDCK NLKRLAICNS LKCKWVESYH LLKLQKYKNS SGGSVLGPNA 420 TASSNFINVK RFRDSQSQNL PEVKTAMKCP KRVIVKASYE NKELIDNDSS CFSPRSLFAL 480 PTEGSSLMLD SFNFVEENSD HDLLLDVPSN GSFPQAELLH PSLSFDGQQA STSSSSIYPH 540 LVRR

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MGKQGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RYSRVKSISV NKNKEVKLLK RKQNSDNMMV GGGAPDYNQG FRKVIDEDTS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCVSRP KQSPVEKLTK DLYTILHEQQ  180
SSYFSASSED DLLFESETPM VSVEIGHGSV LIRHPSSIVR EEESEASSLS VENKQFPSNE  240
AYSHYSITSV HNGSKGVNFP SAGVEKIKNH AGQGMQPEHL KRDKSQNENL QILASHNSPL  300
CNIDLNDVLN FEELMRNLTN EEQQQLLKYL SPVDTLKVPD SLKSTFDSPQ FKENLIYFQQ  360
LLVEGVFDNS FSGAKSEDCK NLKRLAICNS LKCKWVESYH LLKLQKYKNS SGGSVLGPNA  420
TASSNFINVK RFRDSQSQNL PEVKTAMKCP KRVIVKASYE NKELIDNDSS CFSPRSLFAL  480
PTEGSSLMLD SFNFVEENSD HDLLLDVPSN GSFPQAELLH PSLSFDGQQA STSSSSIYPH  540
LVRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-160	GATA family protein