PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903012.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 526aa MW: 57848.8 Da PI: 9.6449

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C k F r+s+L rH r H XP_023903012.1 196 FACSTCAKGFARRSDLARHERIH 218 78*******************99 PP
2	zf-C2H2	16.5	2.4e-05	224	248	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk F ++s L++H r+H XP_023903012.1 224 HVCDhpGCGKQFIQRSALTVHSRVH 248 689999*****************99 PP
3	zf-C2H2	24	9.9e-08	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk+Fs++s+L rH r H XP_023903012.1 254 HMCERCGKPFSDSSSLARHRRIH 276 68*******************99 PP
4	zf-C2H2	22	4.3e-07	282	306	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykCp dC k+F+r+ +L+rH++ H XP_023903012.1 282 YKCPyaDCQKTFTRRTTLTRHQSHH 306 9*********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MAVLSVNSVR NWRNSREGGR AVPHGMDLTS LLNTNRSTAA AGFRNMQYEV PLPMTMNHDM 60 SGNAHYSQQN LYVPNNTGRI KSESTSERGV SPHASEHSSR YSSQTPQQNG MAFSQMASQL 120 ANGMAHARYP TPPQQQHMQQ NPMPIISHSY HPNQAQDQSY QQQAQMGAIQ QTAPQEHSPL 180 EGGRTSTGSS GLPKAFACST CAKGFARRSD LARHERIHSG VRPHVCDHPG CGKQFIQRSA 240 LTVHSRVHTG EKPHMCERCG KPFSDSSSLA RHRRIHSGKR PYKCPYADCQ KTFTRRTTLT 300 RHQSHHTGTI EESEAATAAA LASRMSMQGQ RSRGSDEEDY SQDGKSPMPQ HIDRPSSASP 360 ANGINGLPGQ LQRQSSEYYL NAMNSGIAAM PPHLRSEMQP SPRAQSPAQY AMPVTSAQTR 420 SALTSNPSSG YNPPQILEPP TTNAQQQTGV GNSSPHMTAS MGWQSPHATP HDNYSTYTAT 480 NGQYNNVNAT QMYYQQAAVQ QRPHSTGPVD FGQLRTGQEM WVQHQQ

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MAVLSVNSVR NWRNSREGGR AVPHGMDLTS LLNTNRSTAA AGFRNMQYEV PLPMTMNHDM  60
SGNAHYSQQN LYVPNNTGRI KSESTSERGV SPHASEHSSR YSSQTPQQNG MAFSQMASQL  120
ANGMAHARYP TPPQQQHMQQ NPMPIISHSY HPNQAQDQSY QQQAQMGAIQ QTAPQEHSPL  180
EGGRTSTGSS GLPKAFACST CAKGFARRSD LARHERIHSG VRPHVCDHPG CGKQFIQRSA  240
LTVHSRVHTG EKPHMCERCG KPFSDSSSLA RHRRIHSGKR PYKCPYADCQ KTFTRRTTLT  300
RHQSHHTGTI EESEAATAAA LASRMSMQGQ RSRGSDEEDY SQDGKSPMPQ HIDRPSSASP  360
ANGINGLPGQ LQRQSSEYYL NAMNSGIAAM PPHLRSEMQP SPRAQSPAQY AMPVTSAQTR  420
SALTSNPSSG YNPPQILEPP TTNAQQQTGV GNSSPHMTAS MGWQSPHATP HDNYSTYTAT  480
NGQYNNVNAT QMYYQQAAVQ QRPHSTGPVD FGQLRTGQEM WVQHQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	9e-19	C2H2 family protein