PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903185.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 519aa MW: 56349.4 Da PI: 7.8479

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	148	172	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+C+F H+ XP_023903185.1 148 GEKDCAHYMLTRTCKFGDSCRFDHP 172 7889********************8 PP
2	zf-CCCH	34.9	2.6e-11	200	226	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ XP_023903185.1 200 PGMPDCPYFLKTQRCKFGLRCKFNHPK 226 5789*********************96 PP
3	zf-CCCH	38.5	1.9e-12	249	273	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_023903185.1 249 EPPCAFYMKTGKCKFGPTCKFNHPK 273 79*********************96 PP
4	zf-CCCH	38	2.8e-12	326	351	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_023903185.1 326 PGEADCPFYLKTGSCKYGATCRYNHP 351 57899********************9 PP
5	zf-CCCH	40.4	4.8e-13	410	433	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++CkF+H+ XP_023903185.1 410 QIECDFYMKTGECKFGENCKFHHP 433 568********************8 PP
6	zf-CCCH	42.9	7.9e-14	464	487	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++++tGtCkyG++CkF H+p XP_023903185.1 464 VLCPYYLKTGTCKYGATCKFDHPP 487 79********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MAHQLYGYNP SSSSSSTSSV YGAAATTTSS SRSLNSDQYV PSSIRYYSSS SAAKYSTSAA 60 MYDGGFHYST SSSTPNATSH LASQSSWSDA SDALAALKRS SDVLYHQTVL GAHNTIGQTE 120 AWYSTNSLAK RPRFDSASNL PIYPQRPGEK DCAHYMLTRT CKFGDSCRFD HPIWVPEGGI 180 PDWKEVPPLA ATTESLPERP GMPDCPYFLK TQRCKFGLRC KFNHPKDKLV TEVALENAAI 240 SALPERPSEP PCAFYMKTGK CKFGPTCKFN HPKDIQIPLL GQENGNDEQT ELTMKALATA 300 DAILANSLAS YTPALIYNSK GLPVRPGEAD CPFYLKTGSC KYGATCRYNH PDRHAINPPA 360 AAIGLPIVAS PATNLNIGVV NPAASIYQTI DPRLAQPTVG PTIYPQRPGQ IECDFYMKTG 420 ECKFGENCKF HHPIDRSAPS LLKQAQQQAV KLTLAGLPRR EGAVLCPYYL KTGTCKYGAT 480 CKFDHPPPGE VMAMATSQGT STAVEGDEKE AELVQEQQQ

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MAHQLYGYNP SSSSSSTSSV YGAAATTTSS SRSLNSDQYV PSSIRYYSSS SAAKYSTSAA  60
MYDGGFHYST SSSTPNATSH LASQSSWSDA SDALAALKRS SDVLYHQTVL GAHNTIGQTE  120
AWYSTNSLAK RPRFDSASNL PIYPQRPGEK DCAHYMLTRT CKFGDSCRFD HPIWVPEGGI  180
PDWKEVPPLA ATTESLPERP GMPDCPYFLK TQRCKFGLRC KFNHPKDKLV TEVALENAAI  240
SALPERPSEP PCAFYMKTGK CKFGPTCKFN HPKDIQIPLL GQENGNDEQT ELTMKALATA  300
DAILANSLAS YTPALIYNSK GLPVRPGEAD CPFYLKTGSC KYGATCRYNH PDRHAINPPA  360
AAIGLPIVAS PATNLNIGVV NPAASIYQTI DPRLAQPTVG PTIYPQRPGQ IECDFYMKTG  420
ECKFGENCKF HHPIDRSAPS LLKQAQQQAV KLTLAGLPRR EGAVLCPYYL KTGTCKYGAT  480
CKFDHPPPGE VMAMATSQGT STAVEGDEKE AELVQEQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein