PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903186.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 361aa MW: 39273.2 Da PI: 8.2682

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	42	68	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ XP_023903186.1 42 PGMPDCPYFLKTQRCKFGLRCKFNHPK 68 5789*********************96 PP
2	zf-CCCH	39.1	1.2e-12	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_023903186.1 91 EPPCAFYMKTGKCKFGPTCKFNHPK 115 79*********************96 PP
3	zf-CCCH	38.6	1.8e-12	168	193	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_023903186.1 168 PGEADCPFYLKTGSCKYGATCRYNHP 193 57899********************9 PP
4	zf-CCCH	41	3.1e-13	252	275	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++CkF+H+ XP_023903186.1 252 QIECDFYMKTGECKFGENCKFHHP 275 568********************8 PP
5	zf-CCCH	43.5	5.1e-14	306	329	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++++tGtCkyG++CkF H+p XP_023903186.1 306 VLCPYYLKTGTCKYGATCKFDHPP 329 79********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MRRRIWPPNL LGPMPPTPSP PSNAPPMVPP LAATTESLPE RPGMPDCPYF LKTQRCKFGL 60 RCKFNHPKDK LVTEVALENA AISALPERPS EPPCAFYMKT GKCKFGPTCK FNHPKDIQIP 120 LLGQENGNDE QTELTMKALA TADAILANSL ASYTPALIYN SKGLPVRPGE ADCPFYLKTG 180 SCKYGATCRY NHPDRHAINP PAAAIGLPIV ASPATNLNIG VVNPAASIYQ TIDPRLAQPT 240 VGPTIYPQRP GQIECDFYMK TGECKFGENC KFHHPIDRSA PSLLKQAQQQ AVKLTLAGLP 300 RREGAVLCPY YLKTGTCKYG ATCKFDHPPP GEVMAMATSQ GTSTAVEGDE KEAELVQEQQ 360 Q

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MRRRIWPPNL LGPMPPTPSP PSNAPPMVPP LAATTESLPE RPGMPDCPYF LKTQRCKFGL  60
RCKFNHPKDK LVTEVALENA AISALPERPS EPPCAFYMKT GKCKFGPTCK FNHPKDIQIP  120
LLGQENGNDE QTELTMKALA TADAILANSL ASYTPALIYN SKGLPVRPGE ADCPFYLKTG  180
SCKYGATCRY NHPDRHAINP PAAAIGLPIV ASPATNLNIG VVNPAASIYQ TIDPRLAQPT  240
VGPTIYPQRP GQIECDFYMK TGECKFGENC KFHHPIDRSA PSLLKQAQQQ AVKLTLAGLP  300
RREGAVLCPY YLKTGTCKYG ATCKFDHPPP GEVMAMATSQ GTSTAVEGDE KEAELVQEQQ  360
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-129	C3H family protein