PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903253.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 27857.9 Da PI: 8.4553

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.4	4.4e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr g+lKKA+ELSvLCdaevaviifsstgklye+s+ XP_023903253.1 9 KKIENLNSRQVTFSKRRSGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSN 59 68***********************************************95 PP
2	K-box	61.6	3e-21	87	173	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e+ +++ Lk+e+ +L+ ++lG+dLe+Ls+keLq Le+q+ +++ +++kK+e+lleq+++++ +e+++ en+aL+k+l+e XP_023903253.1 87 VEQAPDDVNALKNELAKLRVAYLRMLGKDLEDLSMKELQILEDQMSEGILAVKDKKEEVLLEQLKKSKIQEQKALLENEALHKQLDE 173 556678899***************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGKIEIKK IENLNSRQVT FSKRRSGLLK KAKELSVLCD AEVAVIIFSS TGKLYEFSNT 60 SMEHTLSRYS RGLEMDYPQR SSDDLAVEQA PDDVNALKNE LAKLRVAYLR MLGKDLEDLS 120 MKELQILEDQ MSEGILAVKD KKEEVLLEQL KKSKIQEQKA LLENEALHKQ LDEIRRTCKS 180 PFLEFNPMEK KLLLSGSKAV STSASEENEH SDTSLHLGLS TKVRRKRKSQ KIDHTCNDSG 240 SQVASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	2e-58	MIKC_MADS family protein