PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903430.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 213aa MW: 24427.2 Da PI: 10.1824

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g++KKA ELSvLCd+e+a+ +fss+gklye+ss XP_023903430.1 9 KRIEDKSSRQVTFSKRRSGLIKKARELSVLCDVEIALCVFSSRGKLYEFSS 59 79***********************************************96 PP
2	K-box	53	1.5e-18	85	177	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e+++ e + e L + e L+ q +l G ++e+Ls+ +L +Le+q + +l++ Rs+K++l+le+i l +ke++l+ee+k L++k+ XP_023903430.1 85 NDIEKNHLEDASLEDVSLPSHAELLEIGQSQLEGPNIEQLSVTDLVKLERQFNAALSQTRSRKTQLMLESIMSLHEKERMLREEKKLLQRKIR 177 55889999999999999**************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MGRKKVVLKR IEDKSSRQVT FSKRRSGLIK KARELSVLCD VEIALCVFSS RGKLYEFSSG 60 NSLSKILDRY QSRIQVEMKE SKGLNDIEKN HLEDASLEDV SLPSHAELLE IGQSQLEGPN 120 IEQLSVTDLV KLERQFNAAL SQTRSRKTQL MLESIMSLHE KERMLREEKK LLQRKIRATR 180 DTKDRTEVVL GLIKHSNHQL AHPPQLETLS LLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	7e-46	MIKC_MADS family protein