PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023903720.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 178aa    MW: 19592.3 Da    PI: 8.5801
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023903720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.31.9e-41111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C++apyf ++++kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l++ela
  XP_023903720.1  11 SCAACKFLKRRCTPNCIFAPYFRSDESKKFAKVHKVFGASNVSKILMEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHELA 105
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                      ++++
  XP_023903720.1 106 IARAR 110
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MKSHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDESKKF AKVHKVFGAS NVSKILMEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHELAIARAR LSRYAAVASS  120
SSTPPSLSSS TVLDDRIGMA PFPDAFSCNG LSYSFSQSPS DLSRYGPVND LGQIPYVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-65LBD family protein