PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904206.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 591aa MW: 65819.9 Da PI: 8.2883

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.8e-17	54	98	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++ Ed ll +vk++ g+ Wk Ia++++ gRt+ qc ++wqk+l XP_023904206.1 54 GWSEKEDNLLSALVKKYNGKKWKQIAAHIP-GRTDVQCLHHWQKVL 98 6***************************.**********986 PP
2	Myb_DNA-binding	57.2	3.8e-18	104	150	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk +G ++W++Ia+ ++ gR +kqc++rw+++l XP_023904206.1 104 KGSWTKEEDDCIIEFVKNYGCKRWSLIAKNLP-GRIGKQCRERWFNHL 150 799***************************.***********97 PP
3	Myb_DNA-binding	52.3	1.3e-16	156	198	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ ++ +++++G++ W+ Iar ++ gRt++ +k++w+ XP_023904206.1 156 KDAWTEEEESVIAYYHHKYGNK-WAQIARFLP-GRTDNAIKNHWN 198 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MVKVKKEKEE LAADSAKEVR FASCSSSYGN CDSSVQRCSV IGRPTGPTRR SRRGWSEKED 60 NLLSALVKKY NGKKWKQIAA HIPGRTDVQC LHHWQKVLNP EVVKGSWTKE EDDCIIEFVK 120 NYGCKRWSLI AKNLPGRIGK QCRERWFNHL DPAINKDAWT EEEESVIAYY HHKYGNKWAQ 180 IARFLPGRTD NAIKNHWNCS MKKKLDSYST DGCDTTCETM SPDFSSPETK STSPDFCSSS 240 TKHECTKVKV EKLNFNKMFS LNHSMELEHN VDTCSTDLVL GNAYGGEIHL MAKRGEPELV 300 DPLNGTQSNR KGAAASGITT RSSIHNVSHD ETDGPLVATF LDVFLDASTY TKQNHIPVAH 360 KILETPKSLR EYASGVMNSR MANGSGNPCS TSLALGLDEH MGQVGKKNQV HRVSQHAVDK 420 NHAYLPSESP LVNAVEDSGG SPSTYVHFRH PNTPFCYSTP TYLGQSMYAN GSSPESTLRN 480 SAMTFKNTPS IIRKRTSRKT GNANLPDVTC TPESTVTSIC DRQYVNSTNF INTKQGFLSF 540 FVETETSVAV RSMERCLEYA FDLEKESVAV KCGKSVSASM SPNFDICSNT M

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MVKVKKEKEE LAADSAKEVR FASCSSSYGN CDSSVQRCSV IGRPTGPTRR SRRGWSEKED  60
NLLSALVKKY NGKKWKQIAA HIPGRTDVQC LHHWQKVLNP EVVKGSWTKE EDDCIIEFVK  120
NYGCKRWSLI AKNLPGRIGK QCRERWFNHL DPAINKDAWT EEEESVIAYY HHKYGNKWAQ  180
IARFLPGRTD NAIKNHWNCS MKKKLDSYST DGCDTTCETM SPDFSSPETK STSPDFCSSS  240
TKHECTKVKV EKLNFNKMFS LNHSMELEHN VDTCSTDLVL GNAYGGEIHL MAKRGEPELV  300
DPLNGTQSNR KGAAASGITT RSSIHNVSHD ETDGPLVATF LDVFLDASTY TKQNHIPVAH  360
KILETPKSLR EYASGVMNSR MANGSGNPCS TSLALGLDEH MGQVGKKNQV HRVSQHAVDK  420
NHAYLPSESP LVNAVEDSGG SPSTYVHFRH PNTPFCYSTP TYLGQSMYAN GSSPESTLRN  480
SAMTFKNTPS IIRKRTSRKT GNANLPDVTC TPESTVTSIC DRQYVNSTNF INTKQGFLSF  540
FVETETSVAV RSMERCLEYA FDLEKESVAV KCGKSVSASM SPNFDICSNT M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-74	MYB family protein