PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904337.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 190aa    MW: 21141.1 Da    PI: 8.2276
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.44.3e-4271061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk FGasnv kll++l+  ++eda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l 
  XP_023904337.1   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKAFGASNVAKLLNELNAAQHEDAVNSLAYEAEARLRDPVYGCVGLIFILQHRLKQVQTDLY 101
                     7********************************************************************************************99 PP

          DUF260  96 llkee 100
                      +k+e
  XP_023904337.1 102 NAKKE 106
                     98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KAFGASNVAK LLNELNAAQH  60
EDAVNSLAYE AEARLRDPVY GCVGLIFILQ HRLKQVQTDL YNAKKELATY IGPQAMLPIL  120
QPPGYIPQQH HPGNPSSSGV ALPYNMSPAM MAIPTGGATH SGQMMIRETQ QQQQQQQHQQ  180
HQIYEAHQPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-79LBD family protein