PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904346.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 236aa    MW: 26652.2 Da    PI: 8.9714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.8e-17129184256
                     T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ + +++ LA++l+L  rqV vWFqNrRa+ k
  XP_023904346.1 129 RKKLRLTKEQSALLEESFKQHSTLNPQkQKQALARQLNLRPRQVEVWFQNRRARTK 184
                     788899******************97527899**********************98 PP
2HD-ZIP_I/II119.81.4e-38129219191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p ++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_023904346.1 129 RKKLRLTKEQSALLEESFKQHSTLNPqKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 219
                     69***********************945799*********************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDFNDVCNTG LVLGLGLTAS AQESSSPSKA PKNKACSNFT PTGFEPSLTL GLSGESYHQV  60
IPRKIIDVKK GYEESIDLYR QASPPHSAVS SFSSGRVKRE RDLSSEEVEA VDRVSSRISD  120
EDEDGPNARK KLRLTKEQSA LLEESFKQHS TLNPQKQKQA LARQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEFLKKCCE TLTDENRRLQ KELQELKALK LAQPLYMHMP AATLTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-75HD-ZIP family protein